Thursday, 16. January 2020¶
To Do:¶
- Read up on SAPT
- Check SAPT outputs (none have been picked up as of 15/1 at 11:30pm)
- Check up on the molclus calcs
- Write some smarter Jupyter code?
- Perhaps a way to input a list and compare all the energies specified?
What I did¶
Only six of the molclus jobs have finishe and none of the SAPT jobs have even been picked up… so today is not going to be the msot interesting
I had a brief meeting with Katya, who said to run the jobs on gadi if they’re not going through on monarch or massive. I want to make sure that the SAPT jobs will run through, so I hope that one of them will get picked up on massive soon. She also suggested dropping the calculation from SAPT2+3 to SAPT2, which i’ve set up.
I’m also trying the run the molclus calcs on 8 cores using M06L to try and speed them up. I can optimise them at M06-2X later, once the conformation search is done.
We’re trying the optimise the Pd and Ni with 1,3-diaminepropane (pn) as the ligand, since a bidentate ligand might be a bit more stable, and it shouldn’t contribute too mucht to the interaction (hopefully)